Term of Award
Summer 2023
Degree Name
Master of Science in Biology (M.S.)
Document Type and Release Option
Thesis (open access)
Copyright Statement / License for Reuse
This work is licensed under a Creative Commons Attribution 4.0 License.
Department
Department of Biology
Committee Chair
Lorenza Beati
Committee Member 1
Joshua Gibson
Committee Member 2
Scott Harrison
Committee Member 3
Christopher Paddock
Committee Member 3 Email
cdp9@cdc.gov
Abstract
The Gulf Coast tick, Amblyomma maculatum Koch, 1844 is widespread throughout North and Central America and is the primary vector for the emerging pathogen Rickettsia parkeri. In the U.S., the population in the Southwest (A. maculatum morphotype III) is morphologically different from the population east of the Rocky Mountains (A. maculatum morphotype II). This research tests the hypothesis that A. maculatum morphotype II and morphotype III represent distinct species through the analysis and comparison of 6 microsatellite loci and suite of 135,221 Single nucleotide polymorphisms (SNPs) generated from ddRADseq. Population genetic analysis of both microsatellites and SNPs reveals very strong genetic isolation between morphotype II and morphotype III with virtually nonexistent gene flow between the two populations. Given this and previous studies investigating the relationship between morphotypes II and III, morphotype III should be elevated to the species level under an integrative species concept. Within morphotype II, the subpopulation sampled in Texas displayed strong differentiation compared to other Eastern sites but further study is warranted to determine its relationship to the rest of the A. maculatum group. Between other Eastern subpopulations there was low to moderate differentiation with no isolation by distance, consistent with long-distance dispersal facilitated primarily by movement on migrating birds. Microsatellites and SNPs were equivalent in their assessment of genetic differentiation, though SNPs had much greater precision and possessed a clearer ability to cluster distinct groups by discriminate analysis of principal components.
Recommended Citation
Deese, Henrey A., "A Comparison of Microsatellites and Single Nucleotide Polymorphisms for the Assessment of Population Structure in the Amblyomma maculatum Koch, 1844 Species Complex" (2023). Electronic Theses and Dissertations. 2627.
https://digitalcommons.georgiasouthern.edu/etd/2627
Research Data and Supplementary Material
Yes
Allelic Richness SNPs
Supplementary_B.csv (5405 kB)
Number of individuals per Population with a given locus (SNPs)
Included in
Biodiversity Commons, Bioinformatics Commons, Evolution Commons, Genetics Commons, Genomics Commons, Population Biology Commons
